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bin_interactions()
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Bins putative interactions by distance |
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bin_interactions_fs()
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Wrapper for bin_interactions() that interacts with the filesystem |
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interpret_peaky()
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Interprets models fitted with peaky |
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interpret_peaky_fs()
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Wrapper for interpret_peaky() that interacts with the filesystem |
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model_bin()
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Obtain readcounts adjusted for several forms of technical and biological background noise |
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model_bin_fs()
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Wrapper for model_bin() that interacts with the filesystem |
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peaky()
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Obtains peak locations and heights based on adjusted readcounts |
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peaky_fs()
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Wrapper for peaky() that interacts with the filesystem |
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peaky_plot()
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Plot a Peaky fine-mapping result |
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peaky_prepare_from_chicago()
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Wrapper that prepares CHiCAGO output for Peaky analysis |
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peaky_run()
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Wrapper that fine-maps a bait's putative interactions |
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peaky_wrapup()
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Combines fine-mapping results for all baits into a table |
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rjmcmc_list()
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Create a list of peaky model files |
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split_baits()
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Regroups putative interactions by bait and calculates p-values under the negative binomial model |
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split_baits_fs()
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Wrapper for split_baits() that interacts with the filesystem |